STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_10770Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology (354 aa)    
Predicted Functional Partners:
CN09_10775
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.979
CN09_10780
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.805
CN09_31765
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily
 
 
 0.769
CN09_01405
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily
 
  
 0.743
CN09_07270
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily
 
 
 0.703
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides
 
   
 0.607
CN09_34005
Nodulation protein NodT; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.550
CN09_24930
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.543
CN09_08750
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.479
CN09_29010
Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 
 0.462
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (3%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >