STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_11635Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (112 aa)    
Predicted Functional Partners:
mprF
Lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.999
CN09_08350
Long-chain fatty acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.787
CN09_16525
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.688
CN09_29415
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.674
CN09_27895
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.665
CN09_06455
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.663
CN09_16795
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.662
CN09_06475
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.661
CN09_01595
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.656
CN09_15495
Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.656
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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