CN09_11830 protein (Agrobacterium rhizogenes)

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CN09_11830

Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family (518 aa)

Predicted Functional Partners:

CN09_10375

0.729

CN09_11820

0.707

ispDF

0.674

CN09_11825

0.663

rplI

0.658

CN09_11835

0.639

ccmE

0.637

CN09_11850

0.625

CN09_11840

0.625

CN09_08270

0.616

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_08270	CN09_10375	CN09_08270	CN09_10375	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	0.999
CN09_08270	CN09_11830	CN09_08270	CN09_11830	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family	0.616
CN09_08270	ispDF	CN09_08270	CN09_07765	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.999
CN09_08270	rplI	CN09_08270	CN09_10765	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L9; Binds to the 23S rRNA	0.814
CN09_10375	CN09_08270	CN09_10375	CN09_08270	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_10375	CN09_11830	CN09_10375	CN09_11830	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family	0.729
CN09_10375	CN09_11840	CN09_10375	CN09_11840	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	Cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method- Protein Homology	0.858
CN09_10375	ccmE	CN09_10375	CN09_11845	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH	0.849
CN09_10375	ispDF	CN09_10375	CN09_07765	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.999
CN09_10375	rplI	CN09_10375	CN09_10765	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	50S ribosomal protein L9; Binds to the 23S rRNA	0.832
CN09_11820	CN09_11825	CN09_11820	CN09_11825	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.995
CN09_11820	CN09_11830	CN09_11820	CN09_11830	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family	0.707
CN09_11820	CN09_11835	CN09_11820	CN09_11835	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome c-type biogenesis protein; Possible subunit of a heme lyase	0.810
CN09_11820	CN09_11840	CN09_11820	CN09_11840	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method- Protein Homology	0.809
CN09_11820	CN09_11850	CN09_11820	CN09_11850	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C biogenesis protein CycH; Derived by automated computational analysis using gene prediction method- Protein Homology	0.668
CN09_11820	ccmE	CN09_11820	CN09_11845	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH	0.809
CN09_11825	CN09_11820	CN09_11825	CN09_11820	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.995
CN09_11825	CN09_11830	CN09_11825	CN09_11830	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family	0.663
CN09_11825	CN09_11835	CN09_11825	CN09_11835	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome c-type biogenesis protein; Possible subunit of a heme lyase	0.816
CN09_11825	CN09_11840	CN09_11825	CN09_11840	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method- Protein Homology	0.822

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