STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12060Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (90 aa)    
Predicted Functional Partners:
CN09_12055
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.959
CN09_20250
Nickel/cobalt efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family
 
   
 0.776
CN09_06940
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde
  
  
 0.720
CN09_12050
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.581
CN09_06950
S-(hydroxymethyl)glutathione dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily
  
  
 0.572
CN09_32285
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.572
CN09_06305
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
       0.416
CN09_17085
Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PEP-utilizing enzyme family
       0.414
CN09_26870
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.411
CN09_06070
Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.406
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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