STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmeRHypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (90 aa)    
Predicted Functional Partners:
CN09_12055
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.964
rcnA
Nickel transporter; Belongs to the NiCoT transporter (TC 2.A.52) family
 
   
 0.797
fghA
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde
  
  
 0.728
bla
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.588
CN09_06950
S-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily
  
  
 0.569
CN09_32285
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.569
CN09_01960
Cu resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.482
CN09_08610
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.444
CN09_10470
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.444
CN09_34345
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.438
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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