STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12255Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (246 aa)    
Predicted Functional Partners:
CN09_16825
Invasion protein B; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.719
CN09_27650
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.682
CN09_06480
UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.674
CN09_07505
Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.660
CN09_15220
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.637
CN09_34290
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.633
CN09_04955
Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.631
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
       0.627
CN09_25440
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.611
CN09_33860
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
 
     0.603
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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