CN09_12255 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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[Homology]

Score

CN09_12255

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (246 aa)

Predicted Functional Partners:

CN09_16825

0.719

CN09_27650

0.682

CN09_06480

0.674

CN09_07505

0.660

CN09_15220

0.637

CN09_34290

0.633

CN09_04955

0.631

polA

0.627

CN09_25440

0.611

CN09_33860

0.603

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04955	CN09_07505	CN09_04955	CN09_07505	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.400
CN09_04955	CN09_12255	CN09_04955	CN09_12255	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.631
CN09_04955	polA	CN09_04955	CN09_13050	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.691
CN09_06480	CN09_07505	CN09_06480	CN09_07505	UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.423
CN09_06480	CN09_12255	CN09_06480	CN09_12255	UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.674
CN09_06480	CN09_15220	CN09_06480	CN09_15220	UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.514
CN09_06480	CN09_16825	CN09_06480	CN09_16825	UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology	0.721
CN09_06480	CN09_25440	CN09_06480	CN09_25440	UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.414
CN09_06480	CN09_27650	CN09_06480	CN09_27650	UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.503
CN09_07505	CN09_04955	CN09_07505	CN09_04955	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.400
CN09_07505	CN09_06480	CN09_07505	CN09_06480	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method- Protein Homology	0.423
CN09_07505	CN09_12255	CN09_07505	CN09_12255	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.660
CN09_07505	CN09_15220	CN09_07505	CN09_15220	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759
CN09_07505	CN09_25440	CN09_07505	CN09_25440	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.462
CN09_07505	CN09_27650	CN09_07505	CN09_27650	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603
CN09_07505	CN09_33860	CN09_07505	CN09_33860	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.707
CN09_07505	CN09_34290	CN09_07505	CN09_34290	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.634
CN09_12255	CN09_04955	CN09_12255	CN09_04955	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.631
CN09_12255	CN09_06480	CN09_12255	CN09_06480	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method- Protein Homology	0.674
CN09_12255	CN09_07505	CN09_12255	CN09_07505	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.660

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