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CN09_12355 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12355" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12355Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (120 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.952
CN09_12350
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (61 aa)
              0.724
CN09_08710
ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology (438 aa)
              0.714
purM
Phosphoribosylformylglycinamidine cyclo-ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (357 aa)
              0.652
CN09_12345
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
 
          0.599
CN09_03990
Bleomycin resistance protein; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
   
          0.595
CN09_00480
Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology (140 aa)
              0.533
CN09_17095
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (141 aa)
   
          0.498
CN09_03245
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
   
          0.490
CN09_07015
Serine dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (468 aa)
              0.471
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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