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CN09_12400 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12400" - Amino acid ABC transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_12400Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)    
Predicted Functional Partners:
CN09_16135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
   
          0.784
CN09_06640
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
 
          0.776
CN09_06920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
   
          0.752
CN09_12955
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
   
          0.749
CN09_10600
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (168 aa)
   
          0.719
CN09_02510
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (75 aa)
   
          0.718
CN09_08155
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
   
          0.716
CN09_27530
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (337 aa)
   
          0.701
CN09_09780
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
 
          0.699
CN09_01735
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)
   
          0.693
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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