CN09_12825 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Gene Fusion

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Score

CN09_12825

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (76 aa)

Predicted Functional Partners:

CN09_29795

0.548

CN09_00515

0.537

CN09_17170

0.508

CN09_34550

0.508

CN09_33010

0.497

CN09_00560

0.483

CN09_32200

0.482

CN09_19075

0.469

CN09_19300

0.458

CN09_17125

0.457

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

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Coexpression

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node1	node2	node1 annotation	node2 annotation	score
CN09_00515	CN09_00560	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.714
CN09_00515	CN09_12825	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.537
CN09_00515	CN09_17125	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.692
CN09_00515	CN09_17170	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.778
CN09_00515	CN09_19300	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.532
CN09_00515	CN09_32200	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.550
CN09_00515	CN09_34550	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.428
CN09_00560	CN09_00515	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.714
CN09_00560	CN09_12825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.483
CN09_00560	CN09_17125	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.789
CN09_00560	CN09_17170	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.673
CN09_00560	CN09_29795	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.699
CN09_00560	CN09_33010	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.713
CN09_12825	CN09_00515	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.537
CN09_12825	CN09_00560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.483
CN09_12825	CN09_17125	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.457
CN09_12825	CN09_17170	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.508
CN09_12825	CN09_19075	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Endonuclease DDE; Derived by automated computational analysis using gene prediction method- Protein Homology	0.469
CN09_12825	CN09_19300	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.458
CN09_12825	CN09_29795	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.548