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CN09_12865 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_12865" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_12865Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (138 aa)    
Predicted Functional Partners:
CN09_12870
Antitoxin; Antitoxin component of a toxin-antitoxin (TA) module (88 aa)
 
          0.989
CN09_12695
P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
 
          0.661
CN09_00525
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (103 aa)
 
          0.634
CN09_12715
VirB1 type IV secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
 
          0.625
CN09_12685
Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
   
          0.617
CN09_12675
Type IV secretion protein VirB9; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
 
          0.547
CN09_12710
Type IV secretory pathway AvhB2 protein; Derived by automated computational analysis using gene prediction method- Protein Homology (100 aa)
 
          0.523
CN09_12705
Type IV secretion protein VirB3; Derived by automated computational analysis using gene prediction method- Protein Homology (112 aa)
   
          0.522
CN09_12680
Conjugal transfer protein TraJ; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
   
          0.512
CN09_18230
Conjugal transfer protein TraG; VirD4 family; Derived by automated computational analysis using gene prediction method- Protein Homology (637 aa)
 
          0.510
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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