CN09_12870 protein (Agrobacterium rhizogenes)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_12870

Antitoxin; Antitoxin component of a toxin-antitoxin (TA) module (88 aa)

Predicted Functional Partners:

CN09_12865

0.989

CN09_18560

0.700

CN09_12695

0.665

CN09_12580

0.650

CN09_22275

0.636

CN09_12685

0.632

CN09_12715

0.621

CN09_00525

0.603

CN09_19725

0.586

CN09_18230

0.527

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00525	CN09_12865	CN09_12875	CN09_12865	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.634
CN09_00525	CN09_12870	CN09_12875	CN09_12870	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Antitoxin; Antitoxin component of a toxin-antitoxin (TA) module	0.603
CN09_00525	CN09_18230	CN09_12875	CN09_18230	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraG; VirD4 family; Derived by automated computational analysis using gene prediction method- Protein Homology	0.470
CN09_00525	CN09_18560	CN09_12875	CN09_18560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.523
CN09_12580	CN09_12715	CN09_12580	CN09_12715	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	VirB1 type IV secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.467
CN09_12580	CN09_12870	CN09_12580	CN09_12870	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Antitoxin; Antitoxin component of a toxin-antitoxin (TA) module	0.650
CN09_12685	CN09_12695	CN09_12685	CN09_12695	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology	P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology	0.986
CN09_12685	CN09_12715	CN09_12685	CN09_12715	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology	VirB1 type IV secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.991
CN09_12685	CN09_12865	CN09_12685	CN09_12865	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.617
CN09_12685	CN09_12870	CN09_12685	CN09_12870	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology	Antitoxin; Antitoxin component of a toxin-antitoxin (TA) module	0.632
CN09_12685	CN09_18230	CN09_12685	CN09_18230	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraG; VirD4 family; Derived by automated computational analysis using gene prediction method- Protein Homology	0.823
CN09_12685	CN09_18560	CN09_12685	CN09_18560	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.426
CN09_12695	CN09_12685	CN09_12695	CN09_12685	P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology	0.986
CN09_12695	CN09_12715	CN09_12695	CN09_12715	P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology	VirB1 type IV secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.981
CN09_12695	CN09_12865	CN09_12695	CN09_12865	P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.661
CN09_12695	CN09_12870	CN09_12695	CN09_12870	P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology	Antitoxin; Antitoxin component of a toxin-antitoxin (TA) module	0.665
CN09_12695	CN09_18230	CN09_12695	CN09_18230	P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TraG; VirD4 family; Derived by automated computational analysis using gene prediction method- Protein Homology	0.797
CN09_12695	CN09_18560	CN09_12695	CN09_18560	P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.536
CN09_12715	CN09_12580	CN09_12715	CN09_12580	VirB1 type IV secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.467
CN09_12715	CN09_12685	CN09_12715	CN09_12685	VirB1 type IV secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method- Protein Homology	0.991

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