CN09_13110 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_13110

Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose (298 aa)

Predicted Functional Partners:

CN09_13100

0.999

phnK

0.999

CN09_13115

0.999

CN09_13120

0.999

CN09_13125

0.999

phnN

0.991

phnC

0.987

CN09_13060

0.981

CN09_13095

0.978

CN09_13080

0.977

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_13060	CN09_13080	CN09_13060	CN09_13080	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.963
CN09_13060	CN09_13095	CN09_13060	CN09_13095	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.802
CN09_13060	CN09_13100	CN09_13060	CN09_13100	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphonate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.983
CN09_13060	CN09_13110	CN09_13060	CN09_13110	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose	0.981
CN09_13060	CN09_13115	CN09_13060	CN09_13115	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Carbon-phosphorus lyase complex subunit PhnI; Required for the use of phosphonate and phosphite; Derived by automated computational analysis using gene prediction method: Protein Homology	0.993
CN09_13060	CN09_13120	CN09_13060	CN09_13120	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein phnH; Derived by automated computational analysis using gene prediction method: Protein Homology	0.983
CN09_13060	CN09_13125	CN09_13060	CN09_13125	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein phnG; Derived by automated computational analysis using gene prediction method: Protein Homology	0.977
CN09_13060	phnC	CN09_13060	CN09_13085	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphonates import ATP-binding protein PhnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family	0.931
CN09_13060	phnK	CN09_13060	CN09_13105	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphonate C-P lyase system protein PhnK; Derived by automated computational analysis using gene prediction method: Protein Homology	0.991
CN09_13060	phnN	CN09_13060	CN09_13055	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	Ribose 1,5-bisphosphate phosphokinase PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)	0.995
CN09_13080	CN09_13060	CN09_13080	CN09_13060	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology	0.963
CN09_13080	CN09_13095	CN09_13080	CN09_13095	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.899
CN09_13080	CN09_13100	CN09_13080	CN09_13100	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphonate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.958
CN09_13080	CN09_13110	CN09_13080	CN09_13110	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose	0.977
CN09_13080	CN09_13115	CN09_13080	CN09_13115	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Carbon-phosphorus lyase complex subunit PhnI; Required for the use of phosphonate and phosphite; Derived by automated computational analysis using gene prediction method: Protein Homology	0.962
CN09_13080	CN09_13120	CN09_13080	CN09_13120	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein phnH; Derived by automated computational analysis using gene prediction method: Protein Homology	0.961
CN09_13080	CN09_13125	CN09_13080	CN09_13125	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein phnG; Derived by automated computational analysis using gene prediction method: Protein Homology	0.960
CN09_13080	phnC	CN09_13080	CN09_13085	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphonates import ATP-binding protein PhnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family	0.995
CN09_13080	phnK	CN09_13080	CN09_13105	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphonate C-P lyase system protein PhnK; Derived by automated computational analysis using gene prediction method: Protein Homology	0.961
CN09_13080	phnN	CN09_13080	CN09_13055	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Ribose 1,5-bisphosphate phosphokinase PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)	0.969

page 1 of 6

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About