CN09_13330 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_13330

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (397 aa)

Predicted Functional Partners:

CN09_11325

0.917

CN09_11330

0.898

CN09_11270

0.783

CN09_09285

0.766

CN09_04675

0.766

CN09_11335

0.674

CN09_11275

0.670

CN09_11305

0.658

CN09_11255

0.553

CN09_13335

0.504

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

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node1	node2	node1 annotation	node2 annotation	score
CN09_04675	CN09_09285	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.862
CN09_04675	CN09_11255	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.452
CN09_04675	CN09_11270	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Phage tail protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.469
CN09_04675	CN09_11325	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase U35; Derived by automated computational analysis using gene prediction method- Protein Homology	0.973
CN09_04675	CN09_11330	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Histone H1; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_04675	CN09_13330	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.766
CN09_09285	CN09_04675	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.862
CN09_09285	CN09_11325	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase U35; Derived by automated computational analysis using gene prediction method- Protein Homology	0.973
CN09_09285	CN09_11330	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Histone H1; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_09285	CN09_13330	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.766
CN09_11255	CN09_04675	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.452
CN09_11255	CN09_11270	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phage tail protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.881
CN09_11255	CN09_11275	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.641
CN09_11255	CN09_11325	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase U35; Derived by automated computational analysis using gene prediction method- Protein Homology	0.780
CN09_11255	CN09_11330	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Histone H1; Derived by automated computational analysis using gene prediction method- Protein Homology	0.869
CN09_11255	CN09_11335	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.905
CN09_11255	CN09_13330	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.553
CN09_11270	CN09_04675	Phage tail protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.469
CN09_11270	CN09_11255	Phage tail protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.881
CN09_11270	CN09_11275	Phage tail protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.968