CN09_13490 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_13490

Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)

Predicted Functional Partners:

CN09_13485

0.974

CN09_13495

0.968

CN09_13500

0.963

CN09_13505

0.960

CN09_13510

0.959

CN09_13525

0.952

CN09_13520

0.951

CN09_13515

0.914

CN09_13480

0.909

CN09_13535

0.889

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 6

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_13480	CN09_13485	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.931
CN09_13480	CN09_13490	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.909
CN09_13480	CN09_13495	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method- Protein Homology	0.880
CN09_13480	CN09_13500	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GSP D family	0.770
CN09_13480	CN09_13505	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.858
CN09_13480	CN09_13510	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	CtpF protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.891
CN09_13480	CN09_13515	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.728
CN09_13480	CN09_13520	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.846
CN09_13480	CN09_13525	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type II secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.880
CN09_13480	CN09_13535	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.848
CN09_13485	CN09_13480	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.931
CN09_13485	CN09_13490	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.974
CN09_13485	CN09_13495	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method- Protein Homology	0.956
CN09_13485	CN09_13500	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GSP D family	0.957
CN09_13485	CN09_13505	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.941
CN09_13485	CN09_13510	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	CtpF protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.957
CN09_13485	CN09_13515	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.905
CN09_13485	CN09_13520	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.939
CN09_13485	CN09_13525	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Type II secretion system protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.946
CN09_13485	CN09_13535	Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.798