CN09_13550 protein (Agrobacterium rhizogenes)

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Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

CN09_13550

Peptidase P60; Derived by automated computational analysis using gene prediction method- Protein Homology (284 aa)

Predicted Functional Partners:

CN09_15290

0.999

CN09_18560

0.999

CN09_08270

0.959

CN09_11255

0.957

CN09_13545

0.949

ispDF

0.863

CN09_13540

0.837

CN09_13535

0.808

CN09_17560

0.804

polA

0.801

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_08270	CN09_11255	CN09_08270	CN09_11255	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.401
CN09_08270	CN09_13550	CN09_08270	CN09_13550	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase P60; Derived by automated computational analysis using gene prediction method- Protein Homology	0.959
CN09_08270	CN09_15290	CN09_08270	CN09_15290	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_08270	CN09_17560	CN09_08270	CN09_17560	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chlorosome protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.775
CN09_08270	CN09_18560	CN09_08270	CN09_18560	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.907
CN09_08270	ispDF	CN09_08270	CN09_07765	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.999
CN09_08270	polA	CN09_08270	CN09_13050	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.984
CN09_11255	CN09_08270	CN09_11255	CN09_08270	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.401
CN09_11255	CN09_13550	CN09_11255	CN09_13550	Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase P60; Derived by automated computational analysis using gene prediction method- Protein Homology	0.957
CN09_13535	CN09_13540	CN09_13535	CN09_13540	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M17 family	0.878
CN09_13535	CN09_13545	CN09_13535	CN09_13545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.684
CN09_13535	CN09_13550	CN09_13535	CN09_13550	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase P60; Derived by automated computational analysis using gene prediction method- Protein Homology	0.808
CN09_13540	CN09_13535	CN09_13540	CN09_13535	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M17 family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.878
CN09_13540	CN09_13545	CN09_13540	CN09_13545	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M17 family	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.835
CN09_13540	CN09_13550	CN09_13540	CN09_13550	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M17 family	Peptidase P60; Derived by automated computational analysis using gene prediction method- Protein Homology	0.837
CN09_13540	CN09_17560	CN09_13540	CN09_17560	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M17 family	Chlorosome protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.422
CN09_13545	CN09_13535	CN09_13545	CN09_13535	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.684
CN09_13545	CN09_13540	CN09_13545	CN09_13540	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M17 family	0.835
CN09_13545	CN09_13550	CN09_13545	CN09_13550	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase P60; Derived by automated computational analysis using gene prediction method- Protein Homology	0.949
CN09_13550	CN09_08270	CN09_13550	CN09_08270	Peptidase P60; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.959

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