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CN09_13600 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13600" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_13600Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (186 aa)    
Predicted Functional Partners:
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (535 aa)
              0.803
CN09_15185
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
   
          0.674
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA (168 aa)
              0.652
CN09_14660
Phosphate starvation protein PhoH; Derived by automated computational analysis using gene prediction method- Protein Homology (354 aa)
              0.652
CN09_11255
Phage tape measure protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1126 aa)
   
          0.652
CN09_04545
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (481 aa)
   
          0.643
CN09_34310
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (565 aa)
   
          0.629
CN09_22215
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
   
          0.588
CN09_03935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
   
          0.586
CN09_14880
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
   
          0.582
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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