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CN09_13655 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13655" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_13655ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (409 aa)    
Predicted Functional Partners:
CN09_13650
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
 
 
  0.981
CN09_13640
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
     
  0.969
CN09_13645
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
 
  0.950
CN09_13660
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (378 aa)
 
 
 
  0.862
CN09_13675
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)
 
          0.803
CN09_13670
Microcystinase C; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) (491 aa)
 
          0.757
CN09_22880
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (168 aa)
 
          0.756
CN09_13690
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
 
          0.729
CN09_13685
RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (287 aa)
 
 
 
  0.702
CN09_13695
Beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method- Protein Homology (639 aa)
 
     
  0.680
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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