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CN09_13965 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_13965" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
CN09_13965Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)    
Predicted Functional Partners:
CN09_27310
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
   
          0.712
CN09_24935
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
   
          0.703
CN09_00430
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
   
          0.677
CN09_13970
Sulfate permease; Derived by automated computational analysis using gene prediction method- Protein Homology (552 aa)
 
     
  0.657
CN09_14925
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
   
          0.655
CN09_13960
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
         
  0.653
CN09_29485
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
   
          0.648
CN09_30755
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
   
          0.610
CN09_31775
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
   
          0.595
CN09_27865
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
   
          0.531
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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