STRINGSTRING
CN09_14370 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_14370" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14370Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (225 aa)    
Predicted Functional Partners:
CN09_14365
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (80 aa)
              0.652
CN09_24545
FAD-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (446 aa)
              0.652
CN09_14360
Ribonuclease VapC; Toxic component of a toxin-antitoxin (TA) module. An RNase (131 aa)
              0.637
CN09_14375
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate (553 aa)
              0.631
CN09_25265
Hippurate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
 
          0.628
CN09_27590
Probable queuosine precursor transporter; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage (212 aa)
              0.611
thrS
Threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction- L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) (662 aa)
              0.611
CN09_14380
Cold-shock protein; Derived by automated computational analysis using gene prediction method- Protein Homology (109 aa)
              0.598
CN09_14390
Allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; Derived by automated computational analysis using gene prediction method- Protein Homology (424 aa)
              0.582
CN09_14385
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (366 aa)
              0.572
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (5%) [HD]