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CN09_14545 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_14545" - Acetyltransferase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14545Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)    
Predicted Functional Partners:
CN09_14550
Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (150 aa)
              0.802
CN09_15965
Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
     
  0.658
CN09_12955
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
   
          0.621
CN09_16135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
   
          0.600
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family (167 aa)
              0.596
CN09_14560
RNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family (286 aa)
         
  0.577
CN09_14555
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the methyltransferase superfamily (385 aa)
   
        0.576
CN09_15955
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (180 aa)
 
     
  0.563
CN09_03245
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
   
          0.538
CN09_14570
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (767 aa)
     
 
  0.536
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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