STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_14835Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology (324 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein
       0.912
CN09_14830
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.829
CN09_22565
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.571
CN09_22560
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.570
CN09_14220
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.560
CN09_01390
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.493
engB
Gtp-binding protein; Necessary for normal cell division and for the maintenance of normal septation
       0.482
CN09_20760
Rna polymerase subunit sigma-70; Belongs to the sigma-70 factor family. ECF subfamily
  
     0.470
CN09_04460
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.451
CN09_25245
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.404
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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