STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_163853-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology (256 aa)    
Predicted Functional Partners:
CN09_16380
2-dehydro-3-deoxygalactonokinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.995
CN09_16370
Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.994
CN09_16375
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.967
CN09_15305
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.965
CN09_16695
Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.963
CN09_11830
Serine peptidase; Belongs to the peptidase S1C family
 
 
  0.961
CN09_00110
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.960
CN09_01230
Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.960
CN09_01285
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.960
CN09_01665
Nodulation protein N; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.960
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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