CN09_16385 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_16385

3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology (256 aa)

Predicted Functional Partners:

CN09_16380

0.995

CN09_16370

0.994

CN09_16375

0.965

CN09_16390

0.886

CN09_23850

0.830

CN09_29310

0.791

CN09_20410

0.747

CN09_20400

0.746

CN09_03580

0.645

CN09_03380

0.527

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03380	CN09_16385	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.527
CN09_03580	CN09_16370	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.656
CN09_03580	CN09_16375	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology	0.783
CN09_03580	CN09_16380	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology	2-dehydro-3-deoxygalactonokinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.832
CN09_03580	CN09_16385	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.645
CN09_03580	CN09_23850	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.665
CN09_03580	CN09_29310	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer	0.784
CN09_16370	CN09_03580	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.656
CN09_16370	CN09_16375	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_16370	CN09_16380	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	2-dehydro-3-deoxygalactonokinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.997
CN09_16370	CN09_16385	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.994
CN09_16370	CN09_16390	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.883
CN09_16370	CN09_20400	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.744
CN09_16370	CN09_20410	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.744
CN09_16370	CN09_23850	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.819
CN09_16370	CN09_29310	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer	0.829
CN09_16375	CN09_03580	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.783
CN09_16375	CN09_16370	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_16375	CN09_16380	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology	2-dehydro-3-deoxygalactonokinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.989
CN09_16375	CN09_16385	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.965