STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16575Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (164 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.999
CN09_06240
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate
       0.999
pheT
Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
       0.902
CN09_13435
The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
      0.890
uca
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.885
glyS
Glycyl-trna synthetase subunit beta; Glycine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.826
CN09_32965
Acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.768
CN09_13785
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.734
folK
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
      0.725
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX
  
  
 0.676
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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