xseB protein (Agrobacterium rhizogenes) - STRING interaction network

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xseB

Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family (83 aa)

Predicted Functional Partners:

ribB

0.999

nnrD

0.999

xseA

0.996

guaB

0.992

CN09_06240

0.987

CN09_29455

0.961

ispDF

0.960

CN09_16735

0.954

CN09_16485

0.896

dxs

0.860

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_06240	ispDF	CN09_06240	CN09_07765	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.939
CN09_06240	nnrD	CN09_06240	CN09_07485	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family	0.547
CN09_06240	xseA	CN09_06240	CN09_13905	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family	0.772
CN09_06240	xseB	CN09_06240	CN09_16730	Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family	Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family	0.987
CN09_16485	dxs	CN09_16485	CN09_16720	Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily	0.512
CN09_16485	guaB	CN09_16485	CN09_16005	Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family	0.862
CN09_16485	ispDF	CN09_16485	CN09_07765	Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.874
CN09_16485	nnrD	CN09_16485	CN09_07485	Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family	0.782
CN09_16485	ribB	CN09_16485	CN09_16765	Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	0.699
CN09_16485	xseA	CN09_16485	CN09_13905	Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family	0.534
CN09_16485	xseB	CN09_16485	CN09_16730	Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family	0.896
CN09_16735	CN09_29455	CN09_16735	CN09_29455	Acetoin utilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	0.744
CN09_16735	dxs	CN09_16735	CN09_16720	Acetoin utilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology	1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily	0.836
CN09_16735	nnrD	CN09_16735	CN09_07485	Acetoin utilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family	0.745
CN09_16735	ribB	CN09_16735	CN09_16765	Acetoin utilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family	0.903
CN09_16735	xseB	CN09_16735	CN09_16730	Acetoin utilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family	0.954
CN09_29455	CN09_16735	CN09_29455	CN09_16735	Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	Acetoin utilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_29455	dxs	CN09_29455	CN09_16720	Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily	0.948
CN09_29455	guaB	CN09_29455	CN09_16005	Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family	0.844
CN09_29455	ispDF	CN09_29455	CN09_07765	Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.890

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