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CN09_16775 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16775" - Signal peptide protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16775Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (367 aa)
              0.999
CN09_27280
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (104 aa)
   
          0.780
CN09_16795
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)
   
          0.778
CN09_14760
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)
   
          0.775
CN09_15085
Regulatory protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
   
          0.772
CN09_15450
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
   
          0.770
CN09_10445
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
   
          0.770
CN09_15750
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (137 aa)
   
          0.769
CN09_15515
Flagellar protein; Derived by automated computational analysis using gene prediction method- Protein Homology (181 aa)
   
          0.766
CN09_16650
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (203 aa)
   
          0.764
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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