CN09_16795 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_16795

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)

Predicted Functional Partners:

CN09_15085

0.779

CN09_27895

0.778

CN09_16775

0.778

CN09_14760

0.776

CN09_06675

0.776

CN09_10445

0.775

slyX

0.774

CN09_06455

0.774

CN09_05155

0.773

CN09_27280

0.773

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_05155	CN09_06455	CN09_05155	CN09_06455	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.780
CN09_05155	CN09_06675	CN09_05155	CN09_06675	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.772
CN09_05155	CN09_10445	CN09_05155	CN09_10445	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.780
CN09_05155	CN09_14760	CN09_05155	CN09_14760	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.752
CN09_05155	CN09_15085	CN09_05155	CN09_15085	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Regulatory protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.776
CN09_05155	CN09_16775	CN09_05155	CN09_16775	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.763
CN09_05155	CN09_16795	CN09_05155	CN09_16795	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.773
CN09_05155	CN09_27280	CN09_05155	CN09_27280	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_05155	CN09_27895	CN09_05155	CN09_27895	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.781
CN09_05155	slyX	CN09_05155	CN09_19885	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein SlyX homolog; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SlyX family	0.777
CN09_06455	CN09_05155	CN09_06455	CN09_05155	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.780
CN09_06455	CN09_06675	CN09_06455	CN09_06675	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.783
CN09_06455	CN09_10445	CN09_06455	CN09_10445	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.778
CN09_06455	CN09_14760	CN09_06455	CN09_14760	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.707
CN09_06455	CN09_15085	CN09_06455	CN09_15085	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Regulatory protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.769
CN09_06455	CN09_16775	CN09_06455	CN09_16775	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.751
CN09_06455	CN09_16795	CN09_06455	CN09_16795	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.774
CN09_06455	CN09_27280	CN09_06455	CN09_27280	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.768
CN09_06455	CN09_27895	CN09_06455	CN09_27895	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.784
CN09_06455	slyX	CN09_06455	CN09_19885	Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein SlyX homolog; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SlyX family	0.774

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About