CN09_16970 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_16970

GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)

Predicted Functional Partners:

CN09_16965

0.932

CN09_16975

0.797

CN09_16980

0.755

CN09_10930

0.484

CN09_16990

0.472

CN09_18005

0.439

CN09_01770

0.436

rpsD

0.429

CN09_02290

0.428

CN09_18010

0.415

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01770	CN09_16970	CN09_01770	CN09_16970	Lysophospholipase; Derived by automated computational analysis using gene prediction method- Protein Homology	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.436
CN09_02290	CN09_16970	CN09_02290	CN09_16970	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.428
CN09_02290	CN09_16975	CN09_02290	CN09_16975	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase M16; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M16 family	0.705
CN09_02290	CN09_16980	CN09_02290	CN09_16980	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method- Protein Homology	0.696
CN09_10930	CN09_16970	CN09_10930	CN09_16970	Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.484
CN09_16965	CN09_16970	CN09_16965	CN09_16970	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.932
CN09_16965	CN09_16975	CN09_16965	CN09_16975	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase M16; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M16 family	0.779
CN09_16965	CN09_16980	CN09_16965	CN09_16980	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method- Protein Homology	0.698
CN09_16965	CN09_16990	CN09_16965	CN09_16990	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.445
CN09_16970	CN09_01770	CN09_16970	CN09_01770	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Lysophospholipase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.436
CN09_16970	CN09_02290	CN09_16970	CN09_02290	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.428
CN09_16970	CN09_10930	CN09_16970	CN09_10930	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.484
CN09_16970	CN09_16965	CN09_16970	CN09_16965	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.932
CN09_16970	CN09_16975	CN09_16970	CN09_16975	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase M16; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M16 family	0.797
CN09_16970	CN09_16980	CN09_16970	CN09_16980	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method- Protein Homology	0.755
CN09_16970	CN09_16990	CN09_16970	CN09_16990	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.472
CN09_16970	CN09_18005	CN09_16970	CN09_18005	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.439
CN09_16970	CN09_18010	CN09_16970	CN09_18010	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.415
CN09_16970	rpsD	CN09_16970	CN09_06590	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	0.429
CN09_16975	CN09_02290	CN09_16975	CN09_02290	Peptidase M16; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M16 family	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.705

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About