CN09_17170 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_17170

Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)

Predicted Functional Partners:

CN09_33010

0.782

CN09_00515

0.778

CN09_26155

0.725

CN09_20290

0.678

CN09_00560

0.673

CN09_17125

0.672

CN09_33240

0.658

CN09_12855

0.652

CN09_17175

0.629

CN09_29820

0.615

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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Coexpression

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node1	node2	node1 annotation	node2 annotation	score
CN09_00515	CN09_00560	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.714
CN09_00515	CN09_12855	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.688
CN09_00515	CN09_17125	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.692
CN09_00515	CN09_17170	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.778
CN09_00515	CN09_20290	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.701
CN09_00515	CN09_26155	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.697
CN09_00515	CN09_29820	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.635
CN09_00515	CN09_33240	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.698
CN09_00560	CN09_00515	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.714
CN09_00560	CN09_12855	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.786
CN09_00560	CN09_17125	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.789
CN09_00560	CN09_17170	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.673
CN09_00560	CN09_26155	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.707
CN09_00560	CN09_29820	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.777
CN09_00560	CN09_33010	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.713
CN09_12855	CN09_00515	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.688
CN09_12855	CN09_00560	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.786
CN09_12855	CN09_17170	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.652
CN09_12855	CN09_26155	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.675
CN09_12855	CN09_33010	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.686