STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17240MoxR protein; Derived by automated computational analysis using gene prediction method: Protein Homology (316 aa)    
Predicted Functional Partners:
CN09_17250
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.991
CN09_17255
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.991
CN09_17245
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.990
CN09_17235
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.989
CN09_17230
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.951
CN09_17270
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.893
guaA
Gmp synthase; Catalyzes the synthesis of GMP from XMP
       0.877
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein
       0.842
CN09_04115
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.757
CN09_08270
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.731
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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