CN09_17240 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_17240

MoxR protein; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)

Predicted Functional Partners:

CN09_17255

0.991

CN09_17250

0.990

CN09_17245

0.989

CN09_17235

0.988

CN09_17230

0.951

CN09_17270

0.895

guaA

0.876

gcvP

0.841

CN09_04115

0.756

CN09_08270

0.718

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04115	CN09_17230	CN09_04115	CN09_17230	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.417
CN09_04115	CN09_17240	CN09_04115	CN09_17240	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	MoxR protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.756
CN09_04115	CN09_17245	CN09_04115	CN09_17245	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.445
CN09_04115	CN09_17250	CN09_04115	CN09_17250	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.714
CN09_04115	CN09_17255	CN09_04115	CN09_17255	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.618
CN09_04115	guaA	CN09_04115	CN09_14055	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP	0.548
CN09_08270	CN09_17240	CN09_08270	CN09_17240	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	MoxR protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.718
CN09_08270	CN09_17255	CN09_08270	CN09_17255	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.906
CN09_08270	guaA	CN09_08270	CN09_14055	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP	0.999
CN09_17230	CN09_04115	CN09_17230	CN09_04115	Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.417
CN09_17230	CN09_17235	CN09_17230	CN09_17235	Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.792
CN09_17230	CN09_17240	CN09_17230	CN09_17240	Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology	MoxR protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.951
CN09_17230	CN09_17245	CN09_17230	CN09_17245	Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.946
CN09_17230	CN09_17250	CN09_17230	CN09_17250	Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.950
CN09_17230	CN09_17255	CN09_17230	CN09_17255	Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.951
CN09_17230	CN09_17270	CN09_17230	CN09_17270	Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.942
CN09_17235	CN09_17230	CN09_17235	CN09_17230	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.792
CN09_17235	CN09_17240	CN09_17235	CN09_17240	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	MoxR protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.988
CN09_17235	CN09_17245	CN09_17235	CN09_17245	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.975
CN09_17235	CN09_17250	CN09_17235	CN09_17250	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.987

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About