CN09_17285 protein (Agrobacterium rhizogenes)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

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[Homology]

Score

CN09_17285

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (568 aa)

Predicted Functional Partners:

CN09_08270

0.999

guaB

0.899

CN09_22160

0.866

CN09_24525

0.841

CN09_21975

0.828

CN09_17315

0.777

CN09_23675

0.770

CN09_00915

0.770

CN09_28835

0.769

CN09_17305

0.759

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00915	CN09_08270	CN09_00915	CN09_08270	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.741
CN09_00915	CN09_17285	CN09_00915	CN09_17285	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770
CN09_00915	CN09_21975	CN09_00915	CN09_21975	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_00915	CN09_22160	CN09_00915	CN09_22160	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.583
CN09_00915	CN09_28835	CN09_00915	CN09_28835	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_08270	CN09_00915	CN09_08270	CN09_00915	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.741
CN09_08270	CN09_17285	CN09_08270	CN09_17285	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_08270	CN09_21975	CN09_08270	CN09_21975	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.410
CN09_08270	CN09_22160	CN09_08270	CN09_22160	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.985
CN09_08270	CN09_28835	CN09_08270	CN09_28835	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_08270	guaB	CN09_08270	CN09_16005	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family	0.917
CN09_17285	CN09_00915	CN09_17285	CN09_00915	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770
CN09_17285	CN09_08270	CN09_17285	CN09_08270	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_17285	CN09_17305	CN09_17285	CN09_17305	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.759
CN09_17285	CN09_17315	CN09_17285	CN09_17315	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.777
CN09_17285	CN09_21975	CN09_17285	CN09_21975	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.828
CN09_17285	CN09_22160	CN09_17285	CN09_22160	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.866
CN09_17285	CN09_23675	CN09_17285	CN09_23675	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chain-length determining protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770
CN09_17285	CN09_24525	CN09_17285	CN09_24525	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.841
CN09_17285	CN09_28835	CN09_17285	CN09_28835	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.769

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