CN09_17615 protein (Agrobacterium rhizogenes)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

CN09_17615

Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)

Predicted Functional Partners:

CN09_17610

0.884

CN09_10415

0.851

ate

0.754

CN09_07335

0.676

CN09_17620

0.667

CN09_05610

0.652

trpA

0.642

CN09_16825

0.640

CN09_15860

0.639

CN09_15195

0.637

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_05610	CN09_15195	CN09_05610	CN09_15195	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.588
CN09_05610	CN09_15860	CN09_05610	CN09_15860	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Phasin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.625
CN09_05610	CN09_17615	CN09_05610	CN09_17615	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.652
CN09_07335	CN09_10415	CN09_07335	CN09_10415	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.545
CN09_07335	CN09_17615	CN09_07335	CN09_17615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.676
CN09_10415	CN09_07335	CN09_10415	CN09_07335	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.545
CN09_10415	CN09_15195	CN09_10415	CN09_15195	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.456
CN09_10415	CN09_15860	CN09_10415	CN09_15860	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phasin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.434
CN09_10415	CN09_16825	CN09_10415	CN09_16825	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology	0.624
CN09_10415	CN09_17615	CN09_10415	CN09_17615	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_10415	ate	CN09_10415	CN09_10420	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Putative arginyl-tRNA--protein transferase; May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate	0.855
CN09_15195	CN09_05610	CN09_15195	CN09_05610	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.588
CN09_15195	CN09_10415	CN09_15195	CN09_10415	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.456
CN09_15195	CN09_15860	CN09_15195	CN09_15860	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phasin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.717
CN09_15195	CN09_17615	CN09_15195	CN09_17615	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.637
CN09_15860	CN09_05610	CN09_15860	CN09_05610	Phasin; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.625
CN09_15860	CN09_10415	CN09_15860	CN09_10415	Phasin; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.434
CN09_15860	CN09_15195	CN09_15860	CN09_15195	Phasin; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.717
CN09_15860	CN09_17615	CN09_15860	CN09_17615	Phasin; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.639
CN09_16825	CN09_10415	CN09_16825	CN09_10415	Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.624

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