CN09_17670 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_17670

Exclusion suppressor FxsA; Derived by automated computational analysis using gene prediction method- Protein Homology (178 aa)

Predicted Functional Partners:

polA

0.999

secB

0.881

CN09_17665

0.867

CN09_17660

0.867

CN09_17655

0.867

CN09_17650

0.867

CN09_32255

0.854

CN09_18515

0.660

hemC

0.652

accD

0.652

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_17650	CN09_17655	CN09_17650	CN09_17655	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method- Protein Homology	0.960
CN09_17650	CN09_17660	CN09_17650	CN09_17660	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.955
CN09_17650	CN09_17665	CN09_17650	CN09_17665	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.962
CN09_17650	CN09_17670	CN09_17650	CN09_17670	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Exclusion suppressor FxsA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_17650	secB	CN09_17650	CN09_17675	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA	0.828
CN09_17655	CN09_17650	CN09_17655	CN09_17650	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method- Protein Homology	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.960
CN09_17655	CN09_17660	CN09_17655	CN09_17660	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.968
CN09_17655	CN09_17665	CN09_17655	CN09_17665	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method- Protein Homology	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.960
CN09_17655	CN09_17670	CN09_17655	CN09_17670	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method- Protein Homology	Exclusion suppressor FxsA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_17655	secB	CN09_17655	CN09_17675	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA	0.828
CN09_17660	CN09_17650	CN09_17660	CN09_17650	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.955
CN09_17660	CN09_17655	CN09_17660	CN09_17655	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method- Protein Homology	0.968
CN09_17660	CN09_17665	CN09_17660	CN09_17665	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.954
CN09_17660	CN09_17670	CN09_17660	CN09_17670	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Exclusion suppressor FxsA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_17660	secB	CN09_17660	CN09_17675	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA	0.828
CN09_17665	CN09_17650	CN09_17665	CN09_17650	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.962
CN09_17665	CN09_17655	CN09_17665	CN09_17655	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method- Protein Homology	0.960
CN09_17665	CN09_17660	CN09_17665	CN09_17660	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.954
CN09_17665	CN09_17670	CN09_17665	CN09_17670	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Exclusion suppressor FxsA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_17665	secB	CN09_17665	CN09_17675	Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA	0.828

page 1 of 3

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About