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CN09_18100 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18100" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18100Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)    
Predicted Functional Partners:
CN09_18105
UPF0276 protein CN09_18105; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0276 family (284 aa)
   
  0.997
CN09_18095
DoxX family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)
 
   
  0.988
CN09_18110
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (94 aa)
 
     
  0.978
CN09_18115
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (91 aa)
 
     
  0.931
CN09_18125
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
 
     
  0.911
CN09_18120
Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (188 aa)
 
     
  0.679
CN09_02105
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
 
     
  0.668
CN09_01820
L-threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde (348 aa)
              0.606
CN09_02100
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (194 aa)
 
     
  0.604
CN09_13785
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
 
          0.570
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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