STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18395Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology (201 aa)    
Predicted Functional Partners:
CN09_33620
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
   
  0.982
CN09_11775
Molecular chaperone Hsp70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family
   
  0.958
dnaK
Molecular chaperone dnak; Acts as a chaperone
   
  0.958
CN09_34040
Molecular chaperone dnak; Acts as a chaperone
   
  0.958
CN09_18390
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.881
CN09_18400
Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.852
CN09_18405
Uridine phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.848
guaA
Gmp synthase; Catalyzes the synthesis of GMP from XMP
  
  
 0.836
CN09_18410
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.778
CN09_16300
Potassium transporter trka; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
       0.773
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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