CN09_18690 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_18690

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (252 aa)

Predicted Functional Partners:

CN09_18680

0.909

CN09_18675

0.901

CN09_18685

0.887

CN09_18700

0.854

CN09_18695

0.854

CN09_18705

0.851

CN09_18670

0.851

CN09_03380

0.830

CN09_18710

0.657

CN09_17085

0.528

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 5

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03380	CN09_17085	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	0.999
CN09_03380	CN09_18670	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.695
CN09_03380	CN09_18690	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.830
CN09_17085	CN09_03380	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_17085	CN09_18690	Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.528
CN09_18670	CN09_03380	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.695
CN09_18670	CN09_18675	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Choline kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.876
CN09_18670	CN09_18680	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.873
CN09_18670	CN09_18685	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.874
CN09_18670	CN09_18690	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_18670	CN09_18695	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	0.865
CN09_18670	CN09_18700	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.865
CN09_18670	CN09_18705	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.860
CN09_18670	CN09_18710	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.686
CN09_18675	CN09_18670	Choline kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.876
CN09_18675	CN09_18680	Choline kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.909
CN09_18675	CN09_18685	Choline kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.892
CN09_18675	CN09_18690	Choline kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.901
CN09_18675	CN09_18695	Choline kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily	0.897
CN09_18675	CN09_18700	Choline kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.920