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CN09_18870 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18870" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18870Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (593 aa)    
Predicted Functional Partners:
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (972 aa)
   
   
  0.999
CN09_34320
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
              0.980
CN09_18875
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
   
  0.978
CN09_32180
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
 
   
  0.922
CN09_13595
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (975 aa)
   
   
  0.907
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (807 aa)
              0.869
CN09_01050
Putrescine/spermidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (350 aa)
 
   
  0.842
CN09_15815
Putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine (365 aa)
   
  0.834
CN09_00610
Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
 
   
  0.831
CN09_15820
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system (380 aa)
 
 
  0.823
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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