CN09_19025 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_19025

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family (281 aa)

Predicted Functional Partners:

CN09_19005

0.904

CN09_19000

0.893

CN09_18995

0.822

CN09_26545

0.819

CN09_26550

0.794

CN09_06165

0.781

CN09_06160

0.745

CN09_21705

0.731

glnP

0.727

CN09_31550

0.721

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_06160	CN09_06165	CN09_06160	CN09_06165	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.980
CN09_06160	CN09_18995	CN09_06160	CN09_18995	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.799
CN09_06160	CN09_19005	CN09_06160	CN09_19005	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.919
CN09_06160	CN09_19025	CN09_06160	CN09_19025	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.745
CN09_06160	CN09_26545	CN09_06160	CN09_26545	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.883
CN09_06165	CN09_06160	CN09_06165	CN09_06160	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.980
CN09_06165	CN09_18995	CN09_06165	CN09_18995	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.816
CN09_06165	CN09_19000	CN09_06165	CN09_19000	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.852
CN09_06165	CN09_19025	CN09_06165	CN09_19025	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.781
CN09_06165	CN09_26550	CN09_06165	CN09_26550	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.880
CN09_06165	CN09_31550	CN09_06165	CN09_31550	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.407
CN09_18995	CN09_06160	CN09_18995	CN09_06160	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.799
CN09_18995	CN09_06165	CN09_18995	CN09_06165	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.816
CN09_18995	CN09_19000	CN09_18995	CN09_19000	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.964
CN09_18995	CN09_19005	CN09_18995	CN09_19005	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.966
CN09_18995	CN09_19025	CN09_18995	CN09_19025	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family	0.822
CN09_18995	CN09_21705	CN09_18995	CN09_21705	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.736
CN09_18995	CN09_26545	CN09_18995	CN09_26545	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.838
CN09_18995	CN09_26550	CN09_18995	CN09_26550	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.831
CN09_18995	CN09_31550	CN09_18995	CN09_31550	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.732

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About