STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20185Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology (234 aa)    
Predicted Functional Partners:
CN09_20175
Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.999
CN09_20180
Cytochrome c oxidase; Belongs to the heme-copper respiratory oxidase family
 0.999
ctaD
Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
 0.997
coxB
Cytochrome b561; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B)
 
 0.996
cyoD
Cytochrome O ubiquinol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.995
cyoB
Cytochrome o ubiquinol oxidase subunit i; Belongs to the heme-copper respiratory oxidase family
 0.995
cyoA
Ubiquinol oxidase subunit ii; Ubiquinol oxidase subunit 2; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.992
CN09_12995
Ubiquinol oxidase subunit ii; Ubiquinol oxidase subunit 2; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.992
CN09_04190
Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
  
 0.990
CN09_20165
Cytochrome C transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.988
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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