CN09_20235 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_20235

Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (402 aa)

Predicted Functional Partners:

CN09_03065

0.692

CN09_31150

0.653

CN09_30500

0.627

CN09_20395

0.612

CN09_22215

0.611

CN09_16910

0.608

CN09_30615

0.607

CN09_25910

0.606

CN09_30495

0.603

CN09_25935

0.593

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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node1	node2	node1 annotation	node2 annotation	score
CN09_03065	CN09_20235	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.692
CN09_03065	CN09_25935	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.488
CN09_16910	CN09_20235	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.608
CN09_16910	CN09_20395	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Urease-associated protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.733
CN09_16910	CN09_22215	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method- Protein Homology	0.755
CN09_16910	CN09_25910	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase M48; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782
CN09_16910	CN09_25935	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.681
CN09_16910	CN09_30495	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_16910	CN09_30500	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.792
CN09_16910	CN09_30615	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.780
CN09_16910	CN09_31150	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.737
CN09_20235	CN09_03065	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.692
CN09_20235	CN09_16910	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.608
CN09_20235	CN09_20395	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Urease-associated protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.612
CN09_20235	CN09_22215	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method- Protein Homology	0.611
CN09_20235	CN09_25910	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidase M48; Derived by automated computational analysis using gene prediction method- Protein Homology	0.606
CN09_20235	CN09_25935	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.593
CN09_20235	CN09_30495	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603
CN09_20235	CN09_30500	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.627
CN09_20235	CN09_30615	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.607