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CN09_20375 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20375" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20375ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (360 aa)    
Predicted Functional Partners:
CN09_20365
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
 
  0.935
CN09_20370
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
 
  0.928
CN09_20380
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (550 aa)
 
     
  0.785
CN09_20360
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
 
 
 
  0.731
CN09_18350
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)
 
 
  0.632
CN09_26185
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
 
 
  0.623
CN09_21445
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (284 aa)
 
 
  0.622
CN09_18345
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
 
  0.611
CN09_25075
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
  0.606
CN09_23455
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
 
  0.600
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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