CN09_20460 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_20460

Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (500 aa)

Predicted Functional Partners:

CN09_20465

0.866

CN09_20475

0.629

CN09_20470

0.603

CN09_03380

0.512

CN09_23555

0.499

CN09_20495

0.465

CN09_20480

0.462

CN09_20490

0.462

CN09_20485

0.457

CN09_24995

0.421

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03380	CN09_20460	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.512
CN09_03380	CN09_20475	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the amidase family	0.441
CN09_03380	CN09_23555	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_03380	CN09_24995	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_20460	CN09_03380	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.512
CN09_20460	CN09_20465	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GMC oxidoreductase family	0.866
CN09_20460	CN09_20470	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603
CN09_20460	CN09_20475	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the amidase family	0.629
CN09_20460	CN09_20480	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.462
CN09_20460	CN09_20485	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Urea ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.457
CN09_20460	CN09_20490	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Urea ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.462
CN09_20460	CN09_20495	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Urea ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.465
CN09_20460	CN09_23555	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.499
CN09_20460	CN09_24995	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.421
CN09_20465	CN09_20460	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GMC oxidoreductase family	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.866
CN09_20465	CN09_20470	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GMC oxidoreductase family	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.617
CN09_20465	CN09_20475	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GMC oxidoreductase family	Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the amidase family	0.604
CN09_20465	CN09_20480	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GMC oxidoreductase family	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.462
CN09_20465	CN09_20485	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GMC oxidoreductase family	Urea ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.442
CN09_20465	CN09_20490	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GMC oxidoreductase family	Urea ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.462