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CN09_20530 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20530" - MarR family transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_20530MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (156 aa)    
Predicted Functional Partners:
CN09_20540
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
 
          0.825
CN09_20535
6-hydroxynicotinate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
 
          0.825
CN09_20545
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (194 aa)
 
     
  0.763
CN09_20520
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1185 aa)
 
          0.720
CN09_20550
Peptide synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (194 aa)
 
          0.682
CN09_20575
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
     
  0.645
CN09_20525
Ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
              0.627
CN09_20580
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (633 aa)
 
     
  0.613
CN09_20585
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (260 aa)
 
     
  0.458
CN09_00620
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (894 aa)
 
     
  0.425
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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