STRINGSTRING
CN09_20630 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20630" - Peptidase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20630Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (373 aa)    
Predicted Functional Partners:
CN09_20625
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (406 aa)
 
 
 
  0.961
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
         
  0.951
CN09_20600
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (440 aa)
 
 
 
  0.875
CN09_20615
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
     
  0.860
CN09_20610
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
     
  0.855
CN09_20620
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (545 aa)
              0.822
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
   
   
  0.762
CN09_20605
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (516 aa)
 
     
  0.750
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
   
        0.719
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (972 aa)
 
        0.701
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (6%) [HD]