STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20705XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (204 aa)    
Predicted Functional Partners:
CN09_20710
Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily
       0.855
CN09_20700
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.767
CN09_13755
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.756
CN09_20715
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.748
CN09_05160
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.724
CN09_07770
Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family
     
 0.721
CN09_33935
Protein GlxC; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.691
CN09_20690
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.673
CN09_20695
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.656
CN09_23280
Homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.652
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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