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CN09_20795 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20795" - Ligand-gated channel in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20795Ligand-gated channel; Derived by automated computational analysis using gene prediction method- Protein Homology (729 aa)    
Predicted Functional Partners:
CN09_20800
Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
 
   
  0.752
CN09_20780
Iron ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily (661 aa)
 
     
  0.744
CN09_03280
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
   
 
  0.727
CN09_20775
Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
 
   
  0.721
CN09_20770
Iron-hydroxamate transporter ATP-binding subunit; Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
   
  0.586
CN09_30315
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
   
  0.537
CN09_25290
S-formylglutathione hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)
 
   
  0.510
CN09_21480
Side tail fiber protein; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
 
   
  0.507
CN09_23245
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
   
  0.499
CN09_03975
Cation transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (740 aa)
   
 
  0.497
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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