CN09_21435 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_21435

Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (404 aa)

Predicted Functional Partners:

CN09_21440

0.894

CN09_21445

0.874

CN09_21425

0.795

CN09_28535

0.669

CN09_28540

0.659

CN09_26135

0.658

CN09_21450

0.619

CN09_29205

0.615

CN09_21430

0.597

CN09_26140

0.589

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 4

Server load: low (8%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_21425	CN09_21430	Alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA polymerase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	0.783
CN09_21425	CN09_21435	Alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.795
CN09_21425	CN09_21440	Alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.553
CN09_21425	CN09_21445	Alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.538
CN09_21430	CN09_21425	DNA polymerase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	Alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.783
CN09_21430	CN09_21435	DNA polymerase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.597
CN09_21430	CN09_21440	DNA polymerase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.445
CN09_21430	CN09_21445	DNA polymerase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.445
CN09_21430	CN09_21450	DNA polymerase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily	0.406
CN09_21435	CN09_21425	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.795
CN09_21435	CN09_21430	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA polymerase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology	0.597
CN09_21435	CN09_21440	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.894
CN09_21435	CN09_21445	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.874
CN09_21435	CN09_21450	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	glycerol-3-phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily	0.619
CN09_21435	CN09_26135	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.658
CN09_21435	CN09_26140	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.589
CN09_21435	CN09_28535	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.669
CN09_21435	CN09_28540	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.659
CN09_21435	CN09_29205	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.615
CN09_21440	CN09_21425	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.553