CN09_21600 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_21600

Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (282 aa)

Predicted Functional Partners:

CN09_21595

0.976

CN09_21590

0.951

CN09_21605

0.939

CN09_21610

0.931

CN09_30275

0.861

CN09_24785

0.784

CN09_30090

0.779

CN09_30280

0.765

CN09_33295

0.742

CN09_19125

0.741

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 3

Server load: low (4%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_19125	CN09_21600	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.741
CN09_21590	CN09_21595	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.951
CN09_21590	CN09_21600	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.951
CN09_21590	CN09_21605	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Abc transporter atp-binding protein; Belongs to the ABC transporter superfamily	0.853
CN09_21590	CN09_21610	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.920
CN09_21590	CN09_24785	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.441
CN09_21590	CN09_30090	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.451
CN09_21590	CN09_30275	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.691
CN09_21595	CN09_21590	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.951
CN09_21595	CN09_21600	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.976
CN09_21595	CN09_21605	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Abc transporter atp-binding protein; Belongs to the ABC transporter superfamily	0.942
CN09_21595	CN09_21610	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.931
CN09_21595	CN09_30280	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.610
CN09_21600	CN09_19125	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.741
CN09_21600	CN09_21590	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.951
CN09_21600	CN09_21595	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.976
CN09_21600	CN09_21605	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Abc transporter atp-binding protein; Belongs to the ABC transporter superfamily	0.939
CN09_21600	CN09_21610	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.931
CN09_21600	CN09_24785	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.784
CN09_21600	CN09_30090	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.779