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CN09_21645 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21645" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21645Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)    
Predicted Functional Partners:
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
 
     
  0.974
CN09_21640
Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (269 aa)
              0.854
CN09_21635
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
              0.853
CN09_22350
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
          0.829
CN09_22335
Lipid kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (357 aa)
 
          0.787
CN09_22365
Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method- Protein Homology (604 aa)
 
     
  0.768
CN09_18370
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (610 aa)
 
     
  0.766
CN09_30905
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
            0.742
CN09_22345
Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
          0.741
CN09_00840
Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method- Protein Homology (599 aa)
 
     
  0.713
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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