CN09_21645 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_21645

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (207 aa)

Predicted Functional Partners:

CN09_22360

0.974

CN09_21640

0.854

CN09_21635

0.853

CN09_22350

0.829

CN09_22335

0.787

CN09_22365

0.768

CN09_18370

0.766

CN09_30905

0.742

CN09_22345

0.741

CN09_00840

0.713

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00840	CN09_21645	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.713
CN09_00840	CN09_22335	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.793
CN09_00840	CN09_22345	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.740
CN09_00840	CN09_22350	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.827
CN09_00840	CN09_22360	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.959
CN09_18370	CN09_21645	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.766
CN09_18370	CN09_22335	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.818
CN09_18370	CN09_22345	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.782
CN09_18370	CN09_22350	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.842
CN09_18370	CN09_22360	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.960
CN09_21635	CN09_21640	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_21635	CN09_21645	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.853
CN09_21640	CN09_21635	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_21640	CN09_21645	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.854
CN09_21645	CN09_00840	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology	0.713
CN09_21645	CN09_18370	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.766
CN09_21645	CN09_21635	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.853
CN09_21645	CN09_21640	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.854
CN09_21645	CN09_22335	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.787
CN09_21645	CN09_22345	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Lauroyl acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.741