CN09_22040 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_22040

Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (342 aa)

Predicted Functional Partners:

CN09_22045

0.976

CN09_22055

0.908

CN09_22050

0.893

CN09_22035

0.794

CN09_14155

0.643

gcvP

0.631

CN09_05595

0.499

CN09_22030

0.492

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_05595	CN09_22040	CN09_05595	CN09_22040	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.499
CN09_14155	CN09_22040	CN09_14155	CN09_22040	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.643
CN09_14155	CN09_22045	CN09_14155	CN09_22045	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.636
CN09_22030	CN09_22035	CN09_22030	CN09_22035	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.675
CN09_22030	CN09_22040	CN09_22030	CN09_22040	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.492
CN09_22030	CN09_22045	CN09_22030	CN09_22045	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.404
CN09_22035	CN09_22030	CN09_22035	CN09_22030	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology	0.675
CN09_22035	CN09_22040	CN09_22035	CN09_22040	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.794
CN09_22035	CN09_22045	CN09_22035	CN09_22045	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.761
CN09_22035	CN09_22050	CN09_22035	CN09_22050	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Fe(3+) ions import ATP-binding protein FbpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system	0.562
CN09_22035	CN09_22055	CN09_22035	CN09_22055	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Inositol-1-monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily	0.693
CN09_22040	CN09_05595	CN09_22040	CN09_05595	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.499
CN09_22040	CN09_14155	CN09_22040	CN09_14155	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.643
CN09_22040	CN09_22030	CN09_22040	CN09_22030	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology	0.492
CN09_22040	CN09_22035	CN09_22040	CN09_22035	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.794
CN09_22040	CN09_22045	CN09_22040	CN09_22045	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.976
CN09_22040	CN09_22050	CN09_22040	CN09_22050	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Fe(3+) ions import ATP-binding protein FbpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system	0.893
CN09_22040	CN09_22055	CN09_22040	CN09_22055	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Inositol-1-monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily	0.908
CN09_22040	gcvP	CN09_22040	CN09_06885	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family	0.631
CN09_22045	CN09_14155	CN09_22045	CN09_14155	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.636

page 1 of 2

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About