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CN09_22550 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_22550" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_22550ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)    
Predicted Functional Partners:
CN09_22545
Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
 
   
  0.984
CN09_22540
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)
 
     
  0.907
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.593
CN09_22555
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
              0.532
CN09_22560
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
              0.506
CN09_18420
Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (277 aa)
 
   
  0.487
CN09_03185
Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
 
   
  0.470
CN09_22565
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (189 aa)
              0.456
CN09_21355
Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
   
  0.444
CN09_22570
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (108 aa)
              0.444
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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