CN09_22675 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_22675

Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (288 aa)

Predicted Functional Partners:

CN09_22670

0.975

CN09_22680

0.928

CN09_22665

0.919

CN09_06390

0.848

CN09_20370

0.848

CN09_20360

0.819

CN09_06375

0.811

CN09_25865

0.761

CN09_20415

0.749

CN09_28535

0.717

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_06375	CN09_06390	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.905
CN09_06375	CN09_20370	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.821
CN09_06375	CN09_20415	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.488
CN09_06375	CN09_22670	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.823
CN09_06375	CN09_22675	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.811
CN09_06375	CN09_25865	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.432
CN09_06390	CN09_06375	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.905
CN09_06390	CN09_20360	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.821
CN09_06390	CN09_22665	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.467
CN09_06390	CN09_22675	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.848
CN09_06390	CN09_22680	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.829
CN09_20360	CN09_06390	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.821
CN09_20360	CN09_20370	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.933
CN09_20360	CN09_20415	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.525
CN09_20360	CN09_22670	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.828
CN09_20360	CN09_22675	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.819
CN09_20360	CN09_25865	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.497
CN09_20360	CN09_28535	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.459
CN09_20370	CN09_06375	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.821
CN09_20370	CN09_20360	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.933